Cohort studies are central to modern health research, enabling the investigation of disease incidence, progression and long-term consequences of exposures. However, cohort designs vary substantially in structure and analytic implementation, and these differences have important implications for their validity and interpretation. This article provides a methodological overview of cohort study design and analysis in periodontology, with emphasis on how design choices and analytical strategies influence the potential sources of bias. We describe the major cohort variants, including prospective, birth, retrospective and nested case-control designs and examine how each shapes exposure measurement, follow-up and outcome ascertainment. Key design considerations include definition of the source population, specification of time zero, handling of dynamic populations and risk sets and the distinction between fixed and time-varying exposures. We then discuss major sources of bias relevant to cohort studies, including confounding, selection bias (index event bias and prevalent user bias included), immortal time bias, censoring and competing risks. Design-based strategies, notably the new-user design and target trial emulation, are presented. We further clarify the basis of a recurring study type in the periodontal literature-single-arm treatment series framed as cohort studies-and discuss how these relate to the cohort design and the inferences they support. Finally, we compare cohort and case-control designs, highlighting both their shared methodological foundations and their important differences in sampling, efficiency, interpretation and application. The credibility of a cohort study depends less on the application of any single statistical method and more on the coherence between the research question, the structure of the data and the assumptions required for valid interpretation. Careful design, transparent reporting and explicit acknowledgment of limitations are essential if cohort studies are to support reliable inference in periodontal research and beyond.